For those of you planning to rerun bcbio, please make the following changes and rerun the script:

Change # 1: In the submission script, modify the bcbio command to:

bcbio_nextgen.py ../config/mov10_project.yaml -n 32 -t ipython -s lsf -q parallel -r mincores=2 -r minconcores=2 '-rW=72:00' --retries 3 --timeout 380

Change # 2: Add module load dev/java/jdk1.7 to your ~/.bashrc file.